J4_4UJD_015
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- UGGA*UACACUG*CGUGAUGGGGAUCG*CAUGAACGAGGAA
- Length
- 38 nucleotides
- Bulged bases
- 4UJD|1|C1|U|1535, 4UJD|1|C1|G|1600, 4UJD|1|C1|U|1602, 4UJD|1|C1|G|1603
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4UJD|1|C1|U|1225
4UJD|1|C1|G|1226
4UJD|1|C1|G|1227
4UJD|1|C1|A|1228
*
4UJD|1|C1|U|1530
4UJD|1|C1|A|1531
4UJD|1|C1|C|1532
4UJD|1|C1|A|1533
4UJD|1|C1|C|1534
4UJD|1|C1|U|1535
4UJD|1|C1|G|1536
*
4UJD|1|C1|C|1597
4UJD|1|C1|G|1598
4UJD|1|C1|U|1599
4UJD|1|C1|G|1600
4UJD|1|C1|A|1601
4UJD|1|C1|U|1602
4UJD|1|C1|G|1603
4UJD|1|C1|G|1604
4UJD|1|C1|G|1605
4UJD|1|C1|G|1606
4UJD|1|C1|A|1607
4UJD|1|C1|U|1608
4UJD|1|C1|C|1609
4UJD|1|C1|G|1610
*
4UJD|1|C1|C|1629
4UJD|1|C1|A|1630
4UJD|1|C1|U|1631
4UJD|1|C1|G|1632
4UJD|1|C1|A|1633
4UJD|1|C1|A|1634
4UJD|1|C1|C|1635
4UJD|1|C1|G|1636
4UJD|1|C1|A|1637
4UJD|1|C1|G|1638
4UJD|1|C1|G|1639
4UJD|1|C1|A|1640
4UJD|1|C1|A|1641
Current chains
- Chain C1
- 18S Ribosomal RNA
Nearby chains
- Chain BA
- Transfer RNA; tRNA
- Chain CF
- 40S RIBOSOMAL PROTEIN US7
- Chain CQ
- 40S RIBOSOMAL PROTEIN US9
- Chain CS
- 40S RIBOSOMAL PROTEIN US13
- Chain CT
- 40S RIBOSOMAL PROTEIN ES19
- Chain CZ
- 40S RIBOSOMAL PROTEIN ES25
Coloring options: