J4_4UJD_016

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CCAAGUC*GCCCAGCCC*GAC*GGUAGCG

Length

26 nucleotides

Bulged bases

4UJD|1|A2|U|197, 4UJD|1|A2|C|213, 4UJD|1|A2|C|214

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|C|192
4UJD|1|A2|C|193
4UJD|1|A2|A|194
4UJD|1|A2|A|195
4UJD|1|A2|G|196
4UJD|1|A2|U|197
4UJD|1|A2|C|198
*
4UJD|1|A2|G|211
4UJD|1|A2|C|212
4UJD|1|A2|C|213
4UJD|1|A2|C|214
4UJD|1|A2|A|215
4UJD|1|A2|G|216
4UJD|1|A2|C|217
4UJD|1|A2|C|218
4UJD|1|A2|C|219
*
4UJD|1|A2|G|223
4UJD|1|A2|A|224
4UJD|1|A2|C|225
*
4UJD|1|A2|G|237
4UJD|1|A2|G|238
4UJD|1|A2|U|239
4UJD|1|A2|A|240
4UJD|1|A2|G|241
4UJD|1|A2|C|242
4UJD|1|A2|G|243

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain AC

60S RIBOSOMAL PROTEIN L4

Chain AY

60S RIBOSOMAL PROTEIN L26

Chain Aj

60S RIBOSOMAL PROTEIN L37