J4_4UJD_017

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GG*UGUGAAGGGCAG*CGUGCCUUGGAAAG*UC

Length

30 nucleotides

Bulged bases

4UJD|1|A2|A|2673

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|G|2595
4UJD|1|A2|G|2596
*
4UJD|1|A2|U|2614
4UJD|1|A2|G|2615
4UJD|1|A2|U|2616
4UJD|1|A2|G|2617
4UJD|1|A2|A|2618
4UJD|1|A2|A|2619
4UJD|1|A2|G|2620
4UJD|1|A2|G|2621
4UJD|1|A2|G|2622
4UJD|1|A2|C|2623
4UJD|1|A2|A|2624
4UJD|1|A2|G|2625
*
4UJD|1|A2|C|2662
4UJD|1|A2|G|2663
4UJD|1|A2|U|2664
4UJD|1|A2|G|2665
4UJD|1|A2|C|2666
4UJD|1|A2|C|2667
4UJD|1|A2|U|2668
4UJD|1|A2|U|2669
4UJD|1|A2|G|2670
4UJD|1|A2|G|2671
4UJD|1|A2|A|2672
4UJD|1|A2|A|2673
4UJD|1|A2|A|2674
4UJD|1|A2|G|2675
*
4UJD|1|A2|U|2695
4UJD|1|A2|C|2696

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AR

60S RIBOSOMAL PROTEIN L19

Chain AU

60S RIBOSOMAL PROTEIN L22

Chain Ag

60S RIBOSOMAL PROTEIN L34

Chain Ak

60S RIBOSOMAL PROTEIN L38