J4_4UJE_002

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

4UJE|1|A2|A|2343, 4UJE|1|A2|U|2346, 4UJE|1|A2|A|2347, 4UJE|1|A2|U|2803, 4UJE|1|A2|U|2805

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJE|1|A2|C|2342
4UJE|1|A2|A|2343
4UJE|1|A2|A|2344
4UJE|1|A2|A|2345
4UJE|1|A2|U|2346
4UJE|1|A2|A|2347
4UJE|1|A2|U|2348
*
4UJE|1|A2|A|2366
4UJE|1|A2|G|2367
4UJE|1|A2|G|2368
*
4UJE|1|A2|C|2801
4UJE|1|A2|A|2802
4UJE|1|A2|U|2803
4UJE|1|A2|G|2804
4UJE|1|A2|U|2805
4UJE|1|A2|U|2806
*
4UJE|1|A2|A|3825
4UJE|1|A2|G|3826

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CP

60S RIBOSOMAL PROTEIN L17

Chain CR

60S RIBOSOMAL PROTEIN L19

Chain Cd

60S RIBOSOMAL PROTEIN L31