J4_4UJE_007

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CUG*CGG*CUUAAGGUAG*UGAAUG

Length

22 nucleotides

Bulged bases

4UJE|1|A2|U|3787

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJE|1|A2|C|3665
4UJE|1|A2|U|3666
4UJE|1|A2|G|3667
*
4UJE|1|A2|C|3721
4UJE|1|A2|G|3722
4UJE|1|A2|G|3723
*
4UJE|1|A2|C|3740
4UJE|1|A2|U|3741
4UJE|1|A2|U|3742
4UJE|1|A2|A|3743
4UJE|1|A2|A|3744
4UJE|1|A2|G|3745
4UJE|1|A2|G|3746
4UJE|1|A2|U|3747
4UJE|1|A2|A|3748
4UJE|1|A2|G|3749
*
4UJE|1|A2|U|3783
4UJE|1|A2|G|3784
4UJE|1|A2|A|3785
4UJE|1|A2|A|3786
4UJE|1|A2|U|3787
4UJE|1|A2|G|3788

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain B1

Small subunit ribosomal RNA; SSU rRNA

Chain CA

60S RIBOSOMAL PROTEIN L8

Chain Cn

60S RIBOSOMAL PROTEIN L41