J4_4UJE_010
3D structure
- PDB id
- 4UJE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.9 Å
Loop
- Sequence
- AUAG*CAG*CGUGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 4UJE|1|AV|U|8, 4UJE|1|AV|U|47, 4UJE|1|AV|C|48
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4UJE_010 not in the Motif Atlas
- Homologous match to J4_7EQJ_002
- Geometric discrepancy: 0.224
- The information below is about J4_7EQJ_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
4UJE|1|AV|A|7
4UJE|1|AV|U|8
4UJE|1|AV|A|9
4UJE|1|AV|G|10
*
4UJE|1|AV|C|25
4UJE|1|AV|A|26
4UJE|1|AV|G|27
*
4UJE|1|AV|C|43
4UJE|1|AV|G|44
4UJE|1|AV|U|45
4UJE|1|AV|G|46
4UJE|1|AV|U|47
4UJE|1|AV|C|48
4UJE|1|AV|C|49
*
4UJE|1|AV|G|65
4UJE|1|AV|U|66
Current chains
- Chain AV
- TRNA-LYS
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain B1
- Small subunit ribosomal RNA; SSU rRNA
- Chain BS
- 40S RIBOSOMAL PROTEIN S18
- Chain CI
- 60S RIBOSOMAL PROTEIN L10
Coloring options: