J4_4UJE_012

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGACG*CGG

Length

21 nucleotides

Bulged bases

4UJE|1|B1|A|104, 4UJE|1|B1|C|356, 4UJE|1|B1|G|407

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJE|1|B1|C|98
4UJE|1|B1|A|99
4UJE|1|B1|U|100
4UJE|1|B1|U|101
4UJE|1|B1|A|102
4UJE|1|B1|A|103
4UJE|1|B1|A|104
4UJE|1|B1|U|105
4UJE|1|B1|C|106
*
4UJE|1|B1|G|355
4UJE|1|B1|C|356
4UJE|1|B1|C|357
*
4UJE|1|B1|G|405
4UJE|1|B1|U|406
4UJE|1|B1|G|407
4UJE|1|B1|A|408
4UJE|1|B1|C|409
4UJE|1|B1|G|410
*
4UJE|1|B1|C|430
4UJE|1|B1|G|431
4UJE|1|B1|G|432

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain BE

40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1

Chain BI

40S RIBOSOMAL PROTEIN S8

Chain BL

40S RIBOSOMAL PROTEIN S11

Chain BX

40S RIBOSOMAL PROTEIN S23