J4_4UJE_015

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CCAAGUC*GCCCAGCCC*GAC*GGUAGCG

Length

26 nucleotides

Bulged bases

4UJE|1|A2|U|197, 4UJE|1|A2|C|213, 4UJE|1|A2|C|214

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJE|1|A2|C|192
4UJE|1|A2|C|193
4UJE|1|A2|A|194
4UJE|1|A2|A|195
4UJE|1|A2|G|196
4UJE|1|A2|U|197
4UJE|1|A2|C|198
*
4UJE|1|A2|G|211
4UJE|1|A2|C|212
4UJE|1|A2|C|213
4UJE|1|A2|C|214
4UJE|1|A2|A|215
4UJE|1|A2|G|216
4UJE|1|A2|C|217
4UJE|1|A2|C|218
4UJE|1|A2|C|219
*
4UJE|1|A2|G|223
4UJE|1|A2|A|224
4UJE|1|A2|C|225
*
4UJE|1|A2|G|237
4UJE|1|A2|G|238
4UJE|1|A2|U|239
4UJE|1|A2|A|240
4UJE|1|A2|G|241
4UJE|1|A2|C|242
4UJE|1|A2|G|243

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain CC

60S RIBOSOMAL PROTEIN L4

Chain CY

60S RIBOSOMAL PROTEIN L26

Chain Cj

60S RIBOSOMAL PROTEIN L37