J4_4UY8_003
3D structure
- PDB id
- 4UY8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAAG*CGAAG*CGAG*CGUUAAG
- Length
- 20 nucleotides
- Bulged bases
- 4UY8|1|A|U|653, 4UY8|1|A|A|654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4UY8_003 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.147
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
4UY8|1|A|C|601
4UY8|1|A|A|602
4UY8|1|A|A|603
4UY8|1|A|G|604
*
4UY8|1|A|C|624
4UY8|1|A|G|625
4UY8|1|A|A|626
4UY8|1|A|A|627
4UY8|1|A|G|628
*
4UY8|1|A|C|635
4UY8|1|A|G|636
4UY8|1|A|A|637
4UY8|1|A|G|638
*
4UY8|1|A|C|650
4UY8|1|A|G|651
4UY8|1|A|U|652
4UY8|1|A|U|653
4UY8|1|A|A|654
4UY8|1|A|A|655
4UY8|1|A|G|656
Current chains
- Chain A
- RRNA-23S RIBOSOMAL RNA
Nearby chains
- Chain 3
- 50S RIBOSOMAL PROTEIN L35
- Chain E
- 50S RIBOSOMAL PROTEIN L4
- Chain L
- 50S RIBOSOMAL PROTEIN L15
Coloring options: