3D structure

PDB id
4UY8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CAAG*CGAAG*CGAG*CGUUAAG
Length
20 nucleotides
Bulged bases
4UY8|1|A|U|653, 4UY8|1|A|A|654
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4UY8_003 not in the Motif Atlas
Homologous match to J4_5J7L_020
Geometric discrepancy: 0.147
The information below is about J4_5J7L_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_60168.1
Basepair signature
cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
Number of instances in this motif group
2

Unit IDs

4UY8|1|A|C|601
4UY8|1|A|A|602
4UY8|1|A|A|603
4UY8|1|A|G|604
*
4UY8|1|A|C|624
4UY8|1|A|G|625
4UY8|1|A|A|626
4UY8|1|A|A|627
4UY8|1|A|G|628
*
4UY8|1|A|C|635
4UY8|1|A|G|636
4UY8|1|A|A|637
4UY8|1|A|G|638
*
4UY8|1|A|C|650
4UY8|1|A|G|651
4UY8|1|A|U|652
4UY8|1|A|U|653
4UY8|1|A|A|654
4UY8|1|A|A|655
4UY8|1|A|G|656

Current chains

Chain A
RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain 3
50S RIBOSOMAL PROTEIN L35
Chain E
50S RIBOSOMAL PROTEIN L4
Chain L
50S RIBOSOMAL PROTEIN L15

Coloring options:


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