J4_4UY8_005

3D structure

PDB id

4UY8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

4UY8|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4UY8_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0867

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4UY8|1|A|G|1310
4UY8|1|A|G|1311
4UY8|1|A|U|1312
4UY8|1|A|U|1313
4UY8|1|A|C|1314
*
4UY8|1|A|G|1338
4UY8|1|A|G|1339
4UY8|1|A|U|1340
4UY8|1|A|G|1341
4UY8|1|A|A|1342
4UY8|1|A|G|1343
*
4UY8|1|A|C|1404
4UY8|1|A|U|1405
*
4UY8|1|A|A|1597
4UY8|1|A|A|1598
4UY8|1|A|U|1599
4UY8|1|A|C|1600
4UY8|1|A|G|1601
4UY8|1|A|U|1602
4UY8|1|A|A|1603
4UY8|1|A|C|1604

Current chains

Chain A

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34

Chain T

50S RIBOSOMAL PROTEIN L23