J4_4V19_006

3D structure

PDB id

4V19 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the mammalian mitoribosome, part 1 of 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

(P5P)(Y5P)(P5P)(P5P)*(Y5P)(P5P)(P5P)*(Y5P)(P5P)(P5P)(P5P)(Y5P)(P5P)*(Y5P)(Y5P)

Length

15 nucleotides

Bulged bases

4V19|1|B|Y5P|8

QA status

Modified nucleotides: P5P, Y5P

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V19|1|B|P5P|7
4V19|1|B|Y5P|8
4V19|1|B|P5P|9
4V19|1|B|P5P|10
*
4V19|1|B|Y5P|26
4V19|1|B|P5P|27
4V19|1|B|P5P|28
*
4V19|1|B|Y5P|44
4V19|1|B|P5P|45
4V19|1|B|P5P|46
4V19|1|B|P5P|47
4V19|1|B|Y5P|48
4V19|1|B|P5P|49
*
4V19|1|B|Y5P|62
4V19|1|B|Y5P|63

Current chains

Chain B

MITORIBOSOMAL CP TRNA

Nearby chains

Chain 0

MITORIBOSOMAL PROTEIN BL27M, MRPL27

Chain S

MITORIBOSOMAL PROTEIN UL18M, MRPL18