J4_4V42_002
3D structure
- PDB id
- 4V42 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the ribosome at 5.5 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 5.5 Å
Loop
- Sequence
- UUA(2MG)*C(M2G)C*GAG(7MG)UC(5MC)*GA
- Length
- 16 nucleotides
- Bulged bases
- 4V42|1|AC|U|8, 4V42|1|AC|U|47, 4V42|1|AC|C|48
- QA status
- Modified nucleotides: 2MG, M2G, 7MG, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V42_002 not in the Motif Atlas
- Homologous match to J4_8VU0_001
- Geometric discrepancy: 0.1403
- The information below is about J4_8VU0_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
4V42|1|AC|U|7
4V42|1|AC|U|8
4V42|1|AC|A|9
4V42|1|AC|2MG|10
*
4V42|1|AC|C|25
4V42|1|AC|M2G|26
4V42|1|AC|C|27
*
4V42|1|AC|G|43
4V42|1|AC|A|44
4V42|1|AC|G|45
4V42|1|AC|7MG|46
4V42|1|AC|U|47
4V42|1|AC|C|48
4V42|1|AC|5MC|49
*
4V42|1|AC|G|65
4V42|1|AC|A|66
Current chains
- Chain AC
- TRNA(PHE)
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AB
- TRNA(PHE)
- Chain AP
- 30S RIBOSOMAL PROTEIN S13
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BP
- 50S RIBOSOMAL PROTEIN L16
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