J4_4V49_005

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

UUAG*CGC*GAGGUCC*GA

Length

16 nucleotides

Bulged bases

4V49|1|AW|U|8, 4V49|1|AW|U|47, 4V49|1|AW|C|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V49_005 not in the Motif Atlas

Homologous match to J4_5AXM_001

Geometric discrepancy: 0.1395

The information below is about J4_5AXM_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4V49|1|AW|U|7
4V49|1|AW|U|8
4V49|1|AW|A|9
4V49|1|AW|G|10
*
4V49|1|AW|C|25
4V49|1|AW|G|26
4V49|1|AW|C|27
*
4V49|1|AW|G|43
4V49|1|AW|A|44
4V49|1|AW|G|45
4V49|1|AW|G|46
4V49|1|AW|U|47
4V49|1|AW|C|48
4V49|1|AW|C|49
*
4V49|1|AW|G|65
4V49|1|AW|A|66

Current chains

Chain AW

tRNA-Phe

Nearby chains

Chain B0

Large subunit ribosomal RNA; LSU rRNA