J4_4V49_012

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

4V49|1|B0|A|1954

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V49_012 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.4661

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V49|1|B0|C|1825
4V49|1|B0|U|1826
4V49|1|B0|G|1827
*
4V49|1|B0|C|1888
4V49|1|B0|G|1889
*
4V49|1|B0|C|1907
4V49|1|B0|C|1908
4V49|1|B0|U|1909
4V49|1|B0|A|1910
4V49|1|B0|A|1911
4V49|1|B0|G|1912
4V49|1|B0|G|1913
4V49|1|B0|U|1914
4V49|1|B0|A|1915
4V49|1|B0|G|1916
*
4V49|1|B0|C|1950
4V49|1|B0|G|1951
4V49|1|B0|A|1952
4V49|1|B0|A|1953
4V49|1|B0|A|1954
4V49|1|B0|G|1955

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AV

Transfer RNA; tRNA

Chain BA

50S ribosomal protein L2