J4_4V4A_005

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

CGAG*CGGAG*CGAGUC*GGCGGCAUUAG

Length

26 nucleotides

Bulged bases

4V4A|1|B0|A|648, 4V4A|1|B0|A|665, 4V4A|1|B0|U|666, 4V4A|1|B0|U|667

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V4A_005 not in the Motif Atlas

Homologous match to J4_7A0S_003

Geometric discrepancy: 0.4829

The information below is about J4_7A0S_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98739.1

Basepair signature

cWW-F-F-F-F-cWW-F-F-F-F-F-F-F-F-cWW-cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

4V4A|1|B0|C|611
4V4A|1|B0|G|612
4V4A|1|B0|A|613
4V4A|1|B0|G|614
*
4V4A|1|B0|C|635
4V4A|1|B0|G|636
4V4A|1|B0|G|637
4V4A|1|B0|A|638
4V4A|1|B0|G|639
*
4V4A|1|B0|C|646
4V4A|1|B0|G|647
4V4A|1|B0|A|648
4V4A|1|B0|G|649
4V4A|1|B0|U|650
4V4A|1|B0|C|651
*
4V4A|1|B0|G|659
4V4A|1|B0|G|660
4V4A|1|B0|C|661
4V4A|1|B0|G|662
4V4A|1|B0|G|663
4V4A|1|B0|C|664
4V4A|1|B0|A|665
4V4A|1|B0|U|666
4V4A|1|B0|U|667
4V4A|1|B0|A|668
4V4A|1|B0|G|669

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BC

50S ribosomal protein L4

Chain BJ

50S ribosomal protein L15