J4_4V4A_010

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

4V4A|1|B0|A|1954

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V4A_010 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.4611

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V4A|1|B0|C|1825
4V4A|1|B0|U|1826
4V4A|1|B0|G|1827
*
4V4A|1|B0|C|1888
4V4A|1|B0|G|1889
*
4V4A|1|B0|C|1907
4V4A|1|B0|C|1908
4V4A|1|B0|U|1909
4V4A|1|B0|A|1910
4V4A|1|B0|A|1911
4V4A|1|B0|G|1912
4V4A|1|B0|G|1913
4V4A|1|B0|U|1914
4V4A|1|B0|A|1915
4V4A|1|B0|G|1916
*
4V4A|1|B0|C|1950
4V4A|1|B0|G|1951
4V4A|1|B0|A|1952
4V4A|1|B0|A|1953
4V4A|1|B0|A|1954
4V4A|1|B0|G|1955

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BA

50S ribosomal protein L2