J4_4V4H_018

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4V4H|1|DB|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V4H_018 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2653

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4V4H|1|DB|C|268
4V4H|1|DB|C|269
*
4V4H|1|DB|G|370
4V4H|1|DB|A|371
4V4H|1|DB|G|372
4V4H|1|DB|U|373
4V4H|1|DB|A|374
4V4H|1|DB|G|375
*
4V4H|1|DB|U|399
4V4H|1|DB|G|400
4V4H|1|DB|A|401
4V4H|1|DB|A|402
4V4H|1|DB|U|403
4V4H|1|DB|A|404
4V4H|1|DB|U|405
4V4H|1|DB|G|406
*
4V4H|1|DB|C|421
4V4H|1|DB|A|422
4V4H|1|DB|A|423
4V4H|1|DB|G|424

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains

Chain DH

50S RIBOSOMAL PROTEIN L9

Chain DZ

50S RIBOSOMAL PROTEIN L31