J4_4V4I_003

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V4I_003 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.3654

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

4V4I|1|w|C|297
4V4I|1|w|G|298
4V4I|1|w|A|299
4V4I|1|w|A|300
4V4I|1|w|G|301
*
4V4I|1|w|C|316
4V4I|1|w|G|317
4V4I|1|w|C|318
4V4I|1|w|C|319
*
4V4I|1|w|G|323
4V4I|1|w|A|324
4V4I|1|w|G|325
*
4V4I|1|w|C|337
4V4I|1|w|G|338
4V4I|1|w|U|339
4V4I|1|w|A|340
4V4I|1|w|G|341

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain S

50S ribosomal protein L24