J4_4V4I_004
3D structure
- PDB id
- 4V4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.71 Å
Loop
- Sequence
- CGAG*CGUAG*CGAG*CGUCUAG
- Length
- 20 nucleotides
- Bulged bases
- 4V4I|1|w|C|653, 4V4I|1|w|U|654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V4I_004 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.5821
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V4I|1|w|C|601
4V4I|1|w|G|602
4V4I|1|w|A|603
4V4I|1|w|G|604
*
4V4I|1|w|C|624
4V4I|1|w|G|625
4V4I|1|w|U|626
4V4I|1|w|A|627
4V4I|1|w|G|628
*
4V4I|1|w|C|635
4V4I|1|w|G|636
4V4I|1|w|A|637
4V4I|1|w|G|638
*
4V4I|1|w|C|650
4V4I|1|w|G|651
4V4I|1|w|U|652
4V4I|1|w|C|653
4V4I|1|w|U|654
4V4I|1|w|A|655
4V4I|1|w|G|656
Current chains
- Chain w
- 23S LARGE SUBUNIT RIBOSOMAL RNA
Nearby chains
- Chain D
- 50S ribosomal protein L4
- Chain J
- 50S ribosomal protein L15
- Chain a
- 50S ribosomal protein L35
Coloring options: