J4_4V4I_016

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

A(4SU)AG*CAG*CGU(7MG)UCC*GU

Length

16 nucleotides

Bulged bases

4V4I|1|z|4SU|8, 4V4I|1|z|U|47, 4V4I|1|z|C|48

QA status

Modified nucleotides: 4SU, 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V4I_016 not in the Motif Atlas

Homologous match to J4_6UGG_002

Geometric discrepancy: 0.3214

The information below is about J4_6UGG_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

4V4I|1|z|A|7
4V4I|1|z|4SU|8
4V4I|1|z|A|9
4V4I|1|z|G|10
*
4V4I|1|z|C|25
4V4I|1|z|A|26
4V4I|1|z|G|27
*
4V4I|1|z|C|43
4V4I|1|z|G|44
4V4I|1|z|U|45
4V4I|1|z|7MG|46
4V4I|1|z|U|47
4V4I|1|z|C|48
4V4I|1|z|C|49
*
4V4I|1|z|G|65
4V4I|1|z|U|66

Current chains

Chain z

P-site PHE-tRNA

Nearby chains

Chain K

50S ribosomal protein L16

Chain n

30S ribosomal protein S13

Chain w

Large subunit ribosomal RNA; LSU rRNA