J4_4V4J_016

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

GUGG*CGUC*GAAGAUCGU*GCC

Length

20 nucleotides

Bulged bases

4V4J|1|z|U|8, 4V4J|1|z|U|47, 4V4J|1|z|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4J|1|z|G|7
4V4J|1|z|U|8
4V4J|1|z|G|9
4V4J|1|z|G|10
*
4V4J|1|z|C|25
4V4J|1|z|G|26
4V4J|1|z|U|27
4V4J|1|z|C|28
*
4V4J|1|z|G|42
4V4J|1|z|A|43
4V4J|1|z|A|44
4V4J|1|z|G|45
4V4J|1|z|A|46
4V4J|1|z|U|47
4V4J|1|z|C|48
4V4J|1|z|G|49
4V4J|1|z|U|50
*
4V4J|1|z|G|64
4V4J|1|z|C|65
4V4J|1|z|C|66

Current chains

Chain z

P-site tRNAfMET

Nearby chains

Chain K

50S ribosomal protein L16

Chain n

30S ribosomal protein S13

Chain w

Large subunit ribosomal RNA; LSU rRNA

Chain y

Small subunit ribosomal RNA; SSU rRNA