J4_4V4P_002

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GCAAGUUGGCC*GGUG*CCGCAGUGAACAGG*CGC

Length

32 nucleotides

Bulged bases

4V4P|1|AA|G|1758, 4V4P|1|AA|A|1762, 4V4P|1|AA|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4P|1|AA|G|1674
4V4P|1|AA|C|1675
4V4P|1|AA|A|1676
4V4P|1|AA|A|1677
4V4P|1|AA|G|1678
4V4P|1|AA|U|1679
4V4P|1|AA|U|1680
4V4P|1|AA|G|1681
4V4P|1|AA|G|1682
4V4P|1|AA|C|1683
4V4P|1|AA|C|1684
*
4V4P|1|AA|G|1704
4V4P|1|AA|G|1705
4V4P|1|AA|U|1706
4V4P|1|AA|G|1707
*
4V4P|1|AA|C|1751
4V4P|1|AA|C|1752
4V4P|1|AA|G|1753
4V4P|1|AA|C|1754
4V4P|1|AA|A|1755
4V4P|1|AA|G|1756
4V4P|1|AA|U|1757
4V4P|1|AA|G|1758
4V4P|1|AA|A|1759
4V4P|1|AA|A|1760
4V4P|1|AA|C|1761
4V4P|1|AA|A|1762
4V4P|1|AA|G|1763
4V4P|1|AA|G|1764
*
4V4P|1|AA|C|1988
4V4P|1|AA|G|1989
4V4P|1|AA|C|1990

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AN

50S ribosomal protein L14

Chain AR

50S ribosomal protein L19

Chain BA

Small subunit ribosomal RNA; SSU rRNA