J4_4V4P_003

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GACUG*CACAGC*GCGAC*GUAAC

Length

21 nucleotides

Bulged bases

4V4P|1|AA|U|1775

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4P|1|AA|G|1772
4V4P|1|AA|A|1773
4V4P|1|AA|C|1774
4V4P|1|AA|U|1775
4V4P|1|AA|G|1776
*
4V4P|1|AA|C|1788
4V4P|1|AA|A|1789
4V4P|1|AA|C|1790
4V4P|1|AA|A|1791
4V4P|1|AA|G|1792
4V4P|1|AA|C|1793
*
4V4P|1|AA|G|1826
4V4P|1|AA|C|1827
4V4P|1|AA|G|1828
4V4P|1|AA|A|1829
4V4P|1|AA|C|1830
*
4V4P|1|AA|G|1975
4V4P|1|AA|U|1976
4V4P|1|AA|A|1977
4V4P|1|AA|A|1978
4V4P|1|AA|C|1979

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2

Chain BA

Small subunit ribosomal RNA; SSU rRNA