J4_4V4P_005

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CAAAGG*CCUGAC*GGG*CGG

Length

18 nucleotides

Bulged bases

4V4P|1|AA|A|2286, 4V4P|1|AA|A|2288, 4V4P|1|AA|U|2344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4P|1|AA|C|2285
4V4P|1|AA|A|2286
4V4P|1|AA|A|2287
4V4P|1|AA|A|2288
4V4P|1|AA|G|2289
4V4P|1|AA|G|2290
*
4V4P|1|AA|C|2342
4V4P|1|AA|C|2343
4V4P|1|AA|U|2344
4V4P|1|AA|G|2345
4V4P|1|AA|A|2346
4V4P|1|AA|C|2347
*
4V4P|1|AA|G|2370
4V4P|1|AA|G|2371
4V4P|1|AA|G|2372
*
4V4P|1|AA|C|2381
4V4P|1|AA|G|2382
4V4P|1|AA|G|2383

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A3

50S ribosomal protein L27

Chain A6

50S ribosomal protein L33

Chain A8

50S ribosomal protein L35

Chain AQ

50S ribosomal protein L18