J4_4V4P_010

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

UUUAGC*GCGC*GAGGUCC*GAA

Length

20 nucleotides

Bulged bases

4V4P|1|BB|U|47

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4P|1|BB|U|6
4V4P|1|BB|U|7
4V4P|1|BB|U|8
4V4P|1|BB|A|9
4V4P|1|BB|G|10
4V4P|1|BB|C|11
*
4V4P|1|BB|G|24
4V4P|1|BB|C|25
4V4P|1|BB|G|26
4V4P|1|BB|C|27
*
4V4P|1|BB|G|43
4V4P|1|BB|A|44
4V4P|1|BB|G|45
4V4P|1|BB|G|46
4V4P|1|BB|U|47
4V4P|1|BB|C|48
4V4P|1|BB|C|49
*
4V4P|1|BB|G|65
4V4P|1|BB|A|66
4V4P|1|BB|A|67

Current chains

Chain BB

tRNA Phe (unmodified bases)

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain BA

Small subunit ribosomal RNA; SSU rRNA