J4_4V4P_016

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

UUAG*CGC*GAGGUCC*GA

Length

16 nucleotides

Bulged bases

4V4P|1|BB|U|47

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V4P_016 not in the Motif Atlas

Homologous match to J4_7EQJ_002

Geometric discrepancy: 0.3134

The information below is about J4_7EQJ_002

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

4V4P|1|BB|U|7
4V4P|1|BB|U|8
4V4P|1|BB|A|9
4V4P|1|BB|G|10
*
4V4P|1|BB|C|25
4V4P|1|BB|G|26
4V4P|1|BB|C|27
*
4V4P|1|BB|G|43
4V4P|1|BB|A|44
4V4P|1|BB|G|45
4V4P|1|BB|G|46
4V4P|1|BB|U|47
4V4P|1|BB|C|48
4V4P|1|BB|C|49
*
4V4P|1|BB|G|65
4V4P|1|BB|A|66

Current chains

Chain BB

tRNA Phe (unmodified bases)

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain BA

Small subunit ribosomal RNA; SSU rRNA