J4_4V4Q_028

3D structure

PDB id

4V4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V4Q_028 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.1375

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4V4Q|1|DB|G|2643
4V4Q|1|DB|G|2644
4V4Q|1|DB|G|2645
4V4Q|1|DB|C|2646
*
4V4Q|1|DB|G|2674
4V4Q|1|DB|A|2675
4V4Q|1|DB|C|2676
*
4V4Q|1|DB|G|2731
4V4Q|1|DB|G|2732
4V4Q|1|DB|A|2733
4V4Q|1|DB|A|2734
4V4Q|1|DB|G|2735
*
4V4Q|1|DB|U|2769
4V4Q|1|DB|G|2770
4V4Q|1|DB|C|2771

Current chains

Chain DB

23S ribosomal RNA

Nearby chains

Chain DD

50S ribosomal protein L3

Chain DJ

50S ribosomal protein L13

Chain DK

50S ribosomal protein L14