J4_4V4R_004
3D structure
- PDB id
- 4V4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the whole ribosomal complex.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 5.9 Å
Loop
- Sequence
- UUUAG*CGC*GAGGUCCUG*CAGAA
- Length
- 22 nucleotides
- Bulged bases
- 4V4R|1|AW|U|8, 4V4R|1|AW|U|47, 4V4R|1|AW|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V4R_004 not in the Motif Atlas
- Homologous match to J4_6ORD_005
- Geometric discrepancy: 0.4543
- The information below is about J4_6ORD_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V4R|1|AW|U|6
4V4R|1|AW|U|7
4V4R|1|AW|U|8
4V4R|1|AW|A|9
4V4R|1|AW|G|10
*
4V4R|1|AW|C|25
4V4R|1|AW|G|26
4V4R|1|AW|C|27
*
4V4R|1|AW|G|43
4V4R|1|AW|A|44
4V4R|1|AW|G|45
4V4R|1|AW|G|46
4V4R|1|AW|U|47
4V4R|1|AW|C|48
4V4R|1|AW|C|49
4V4R|1|AW|U|50
4V4R|1|AW|G|51
*
4V4R|1|AW|C|63
4V4R|1|AW|A|64
4V4R|1|AW|G|65
4V4R|1|AW|A|66
4V4R|1|AW|A|67
Current chains
- Chain AW
- E-site tRNA (Phe)
Nearby chains
- Chain AG
- 30S ribosomal protein S7
- Chain AK
- 30S ribosomal protein S11
- Chain B6
- 50S ribosomal protein L33
Coloring options: