J4_4V4S_010

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

4V4S|1|BA|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V4S_010 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.2414

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

4V4S|1|BA|U|1833
4V4S|1|BA|U|1834
4V4S|1|BA|G|1835
*
4V4S|1|BA|C|1905
4V4S|1|BA|G|1906
*
4V4S|1|BA|C|1924
4V4S|1|BA|C|1925
4V4S|1|BA|U|1926
4V4S|1|BA|A|1927
4V4S|1|BA|A|1928
4V4S|1|BA|G|1929
4V4S|1|BA|G|1930
4V4S|1|BA|U|1931
4V4S|1|BA|A|1932
4V4S|1|BA|G|1933
*
4V4S|1|BA|C|1967
4V4S|1|BA|G|1968
4V4S|1|BA|A|1969
4V4S|1|BA|A|1970
4V4S|1|BA|A|1971
4V4S|1|BA|A|1972

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AV

Transfer RNA; tRNA

Chain BD

50S ribosomal protein L2