J4_4V4V_003

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CGUAAAGCG*CGAAAG*CCGUAAACGAUG*CCG

Length

30 nucleotides

Bulged bases

4V4V|1|AA|A|572, 4V4V|1|AA|C|576, 4V4V|1|AA|A|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4V|1|AA|C|569
4V4V|1|AA|G|570
4V4V|1|AA|U|571
4V4V|1|AA|A|572
4V4V|1|AA|A|573
4V4V|1|AA|A|574
4V4V|1|AA|G|575
4V4V|1|AA|C|576
4V4V|1|AA|G|577
*
4V4V|1|AA|C|764
4V4V|1|AA|G|765
4V4V|1|AA|A|766
4V4V|1|AA|A|767
4V4V|1|AA|A|768
4V4V|1|AA|G|769
*
4V4V|1|AA|C|810
4V4V|1|AA|C|811
4V4V|1|AA|G|812
4V4V|1|AA|U|813
4V4V|1|AA|A|814
4V4V|1|AA|A|815
4V4V|1|AA|A|816
4V4V|1|AA|C|817
4V4V|1|AA|G|818
4V4V|1|AA|A|819
4V4V|1|AA|U|820
4V4V|1|AA|G|821
*
4V4V|1|AA|C|879
4V4V|1|AA|C|880
4V4V|1|AA|G|881

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AH

30S ribosomal subunit protein S8

Chain AO

30S ribosomal subunit protein S15

Chain B0

Large subunit ribosomal RNA; LSU rRNA