J4_4V4V_004
3D structure
- PDB id
- 4V4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- UGGA*UACAAUG*CGUAGUCC*GUCGGAA
- Length
- 26 nucleotides
- Bulged bases
- 4V4V|1|AA|U|1240, 4V4V|1|AA|C|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V4V|1|AA|U|943
4V4V|1|AA|G|944
4V4V|1|AA|G|945
4V4V|1|AA|A|946
*
4V4V|1|AA|U|1235
4V4V|1|AA|A|1236
4V4V|1|AA|C|1237
4V4V|1|AA|A|1238
4V4V|1|AA|A|1239
4V4V|1|AA|U|1240
4V4V|1|AA|G|1241
*
4V4V|1|AA|C|1296
4V4V|1|AA|G|1297
4V4V|1|AA|U|1298
4V4V|1|AA|A|1299
4V4V|1|AA|G|1300
4V4V|1|AA|U|1301
4V4V|1|AA|C|1302
4V4V|1|AA|C|1303
*
4V4V|1|AA|G|1334
4V4V|1|AA|U|1335
4V4V|1|AA|C|1336
4V4V|1|AA|G|1337
4V4V|1|AA|G|1338
4V4V|1|AA|A|1339
4V4V|1|AA|A|1340
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AG
- 30S ribosomal subunit protein S7
- Chain AI
- 30S ribosomal subunit protein S9
- Chain AM
- 30S ribosomal subunit protein S13
- Chain AV
- Transfer RNA; tRNA
- Chain AW
- Transfer RNA; tRNA
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