3D structure

PDB id
4V4V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
Experimental method
ELECTRON MICROSCOPY
Resolution
15 Å

Loop

Sequence
UGGA*UACAAUG*CGUAGUCC*GUCGGAA
Length
26 nucleotides
Bulged bases
4V4V|1|AA|U|1240, 4V4V|1|AA|C|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V4V|1|AA|U|943
4V4V|1|AA|G|944
4V4V|1|AA|G|945
4V4V|1|AA|A|946
*
4V4V|1|AA|U|1235
4V4V|1|AA|A|1236
4V4V|1|AA|C|1237
4V4V|1|AA|A|1238
4V4V|1|AA|A|1239
4V4V|1|AA|U|1240
4V4V|1|AA|G|1241
*
4V4V|1|AA|C|1296
4V4V|1|AA|G|1297
4V4V|1|AA|U|1298
4V4V|1|AA|A|1299
4V4V|1|AA|G|1300
4V4V|1|AA|U|1301
4V4V|1|AA|C|1302
4V4V|1|AA|C|1303
*
4V4V|1|AA|G|1334
4V4V|1|AA|U|1335
4V4V|1|AA|C|1336
4V4V|1|AA|G|1337
4V4V|1|AA|G|1338
4V4V|1|AA|A|1339
4V4V|1|AA|A|1340

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AG
30S ribosomal subunit protein S7
Chain AI
30S ribosomal subunit protein S9
Chain AM
30S ribosomal subunit protein S13
Chain AV
Transfer RNA; tRNA
Chain AW
Transfer RNA; tRNA

Coloring options:

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