J4_4V4V_005

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CUUGACAUCCACGGAAGU*AUGUGCC*GGAACCGUGAGACAG*CUUACG

Length

46 nucleotides

Bulged bases

4V4V|1|AA|A|1004, 4V4V|1|AA|C|1214

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4V|1|AA|C|990
4V4V|1|AA|U|991
4V4V|1|AA|U|992
4V4V|1|AA|G|993
4V4V|1|AA|A|994
4V4V|1|AA|C|995
4V4V|1|AA|A|996
4V4V|1|AA|U|997
4V4V|1|AA|C|998
4V4V|1|AA|C|999
4V4V|1|AA|A|1000
4V4V|1|AA|C|1001
4V4V|1|AA|G|1002
4V4V|1|AA|G|1003
4V4V|1|AA|A|1004
4V4V|1|AA|A|1005
4V4V|1|AA|G|1006
4V4V|1|AA|U|1007
*
4V4V|1|AA|A|1022
4V4V|1|AA|U|1023
4V4V|1|AA|G|1024
4V4V|1|AA|U|1025
4V4V|1|AA|G|1026
4V4V|1|AA|C|1027
4V4V|1|AA|C|1028
*
4V4V|1|AA|G|1033
4V4V|1|AA|G|1034
4V4V|1|AA|A|1035
4V4V|1|AA|A|1036
4V4V|1|AA|C|1037
4V4V|1|AA|C|1038
4V4V|1|AA|G|1039
4V4V|1|AA|U|1040
4V4V|1|AA|G|1041
4V4V|1|AA|A|1042
4V4V|1|AA|G|1043
4V4V|1|AA|A|1044
4V4V|1|AA|C|1045
4V4V|1|AA|A|1046
4V4V|1|AA|G|1047
*
4V4V|1|AA|C|1210
4V4V|1|AA|U|1211
4V4V|1|AA|U|1212
4V4V|1|AA|A|1213
4V4V|1|AA|C|1214
4V4V|1|AA|G|1215

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AN

30S ribosomal subunit protein S14