J4_4V4V_011

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CGAUAAA*UC*GCUUGAGAGAACU*AGACUCAG

Length

30 nucleotides

Bulged bases

4V4V|1|B0|G|1271, 4V4V|1|B0|A|1272, 4V4V|1|B0|U|1273, 4V4V|1|B0|A|1274, 4V4V|1|B0|A|1275, 4V4V|1|B0|C|1646, 4V4V|1|B0|U|1647, 4V4V|1|B0|A|1652, 4V4V|1|B0|G|1653, 4V4V|1|B0|C|2006

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4V|1|B0|C|1270
4V4V|1|B0|G|1271
4V4V|1|B0|A|1272
4V4V|1|B0|U|1273
4V4V|1|B0|A|1274
4V4V|1|B0|A|1275
4V4V|1|B0|A|1276
*
4V4V|1|B0|U|1294
4V4V|1|B0|C|1295
*
4V4V|1|B0|G|1645
4V4V|1|B0|C|1646
4V4V|1|B0|U|1647
4V4V|1|B0|U|1648
4V4V|1|B0|G|1649
4V4V|1|B0|A|1650
4V4V|1|B0|G|1651
4V4V|1|B0|A|1652
4V4V|1|B0|G|1653
4V4V|1|B0|A|1654
4V4V|1|B0|A|1655
4V4V|1|B0|C|1656
4V4V|1|B0|U|1657
*
4V4V|1|B0|A|2003
4V4V|1|B0|G|2004
4V4V|1|B0|A|2005
4V4V|1|B0|C|2006
4V4V|1|B0|U|2007
4V4V|1|B0|C|2008
4V4V|1|B0|A|2009
4V4V|1|B0|G|2010

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BL

50S ribosomal protein L17

Chain BQ

50S ribosomal protein L22