J4_4V4V_013

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UAUGC*GUUGGU*AUCGGGAG*CGAAGUA

Length

26 nucleotides

Bulged bases

4V4V|1|B0|U|1445

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4V|1|B0|U|1443
4V4V|1|B0|A|1444
4V4V|1|B0|U|1445
4V4V|1|B0|G|1446
4V4V|1|B0|C|1447
*
4V4V|1|B0|G|1464
4V4V|1|B0|U|1465
4V4V|1|B0|U|1466
4V4V|1|B0|G|1467
4V4V|1|B0|G|1468
4V4V|1|B0|U|1469
*
4V4V|1|B0|A|1522
4V4V|1|B0|U|1523
4V4V|1|B0|C|1524
4V4V|1|B0|G|1525
4V4V|1|B0|G|1526
4V4V|1|B0|G|1527
4V4V|1|B0|A|1528
4V4V|1|B0|G|1529
*
4V4V|1|B0|C|1542
4V4V|1|B0|G|1543
4V4V|1|B0|A|1544
4V4V|1|B0|A|1545
4V4V|1|B0|G|1546
4V4V|1|B0|U|1547
4V4V|1|B0|A|1548

Current chains

Chain B0

23S ribosomal RNA

Nearby chains