J4_4V4V_015

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CUGCCCGGUGCCGGAAGGUUAAUGG*CUCGAAGCCCCGGUAAACGGCG*CCUAAGGUAGCGAAAUUCCUUG*CCUGCACGAAUG

Length

81 nucleotides

Bulged bases

4V4V|1|B0|A|1900, 4V4V|1|B0|U|1926, 4V4V|1|B0|A|1938, 4V4V|1|B0|U|1944, 4V4V|1|B0|U|1963, 4V4V|1|B0|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4V|1|B0|C|1833
4V4V|1|B0|U|1834
4V4V|1|B0|G|1835
4V4V|1|B0|C|1836
4V4V|1|B0|C|1837
4V4V|1|B0|C|1838
4V4V|1|B0|G|1839
4V4V|1|B0|G|1840
4V4V|1|B0|U|1841
4V4V|1|B0|G|1842
4V4V|1|B0|C|1843
4V4V|1|B0|C|1844
4V4V|1|B0|G|1845
4V4V|1|B0|G|1846
4V4V|1|B0|A|1847
4V4V|1|B0|A|1848
4V4V|1|B0|G|1849
4V4V|1|B0|G|1850
4V4V|1|B0|U|1851
4V4V|1|B0|U|1852
4V4V|1|B0|A|1853
4V4V|1|B0|A|1854
4V4V|1|B0|U|1859
4V4V|1|B0|G|1860
4V4V|1|B0|G|1861
*
4V4V|1|B0|C|1881
4V4V|1|B0|U|1882
4V4V|1|B0|C|1887
4V4V|1|B0|G|1888
4V4V|1|B0|A|1889
4V4V|1|B0|A|1890
4V4V|1|B0|G|1891
4V4V|1|B0|C|1892
4V4V|1|B0|C|1893
4V4V|1|B0|C|1894
4V4V|1|B0|C|1895
4V4V|1|B0|G|1896
4V4V|1|B0|G|1897
4V4V|1|B0|U|1898
4V4V|1|B0|A|1899
4V4V|1|B0|A|1900
4V4V|1|B0|A|1901
4V4V|1|B0|C|1902
4V4V|1|B0|G|1903
4V4V|1|B0|G|1904
4V4V|1|B0|C|1905
4V4V|1|B0|G|1906
*
4V4V|1|B0|C|1924
4V4V|1|B0|C|1925
4V4V|1|B0|U|1926
4V4V|1|B0|A|1927
4V4V|1|B0|A|1928
4V4V|1|B0|G|1929
4V4V|1|B0|G|1930
4V4V|1|B0|U|1931
4V4V|1|B0|A|1932
4V4V|1|B0|G|1933
4V4V|1|B0|C|1934
4V4V|1|B0|G|1935
4V4V|1|B0|A|1936
4V4V|1|B0|A|1937
4V4V|1|B0|A|1938
4V4V|1|B0|U|1939
4V4V|1|B0|U|1940
4V4V|1|B0|C|1941
4V4V|1|B0|C|1942
4V4V|1|B0|U|1943
4V4V|1|B0|U|1944
4V4V|1|B0|G|1945
*
4V4V|1|B0|C|1961
4V4V|1|B0|C|1962
4V4V|1|B0|U|1963
4V4V|1|B0|G|1964
4V4V|1|B0|C|1965
4V4V|1|B0|A|1966
4V4V|1|B0|C|1967
4V4V|1|B0|G|1968
4V4V|1|B0|A|1969
4V4V|1|B0|A|1970
4V4V|1|B0|U|1971
4V4V|1|B0|G|1972

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AU

Transfer RNA; tRNA

Chain AV

Transfer RNA; tRNA

Chain AW

Transfer RNA; tRNA