J4_4V4W_004
3D structure
- PDB id
- 4V4W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- UGGA*UACAAUGGCGACUACAAAG*CAUAAAGUGCGUCGUAGUCCGGAUU*AUGAAGUCGGAA
- Length
- 60 nucleotides
- Bulged bases
- 4V4W|1|AA|U|1240, 4V4W|1|AA|U|1286, 4V4W|1|AA|U|1298, 4V4W|1|AA|C|1302, 4V4W|1|AA|C|1336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V4W|1|AA|U|943
4V4W|1|AA|G|944
4V4W|1|AA|G|945
4V4W|1|AA|A|946
*
4V4W|1|AA|U|1235
4V4W|1|AA|A|1236
4V4W|1|AA|C|1237
4V4W|1|AA|A|1238
4V4W|1|AA|A|1239
4V4W|1|AA|U|1240
4V4W|1|AA|G|1241
4V4W|1|AA|G|1242
4V4W|1|AA|C|1243
4V4W|1|AA|G|1244
4V4W|1|AA|A|1245
4V4W|1|AA|C|1246
4V4W|1|AA|U|1247
4V4W|1|AA|A|1248
4V4W|1|AA|C|1249
4V4W|1|AA|A|1250
4V4W|1|AA|A|1251
4V4W|1|AA|A|1252
4V4W|1|AA|G|1253
*
4V4W|1|AA|C|1284
4V4W|1|AA|A|1285
4V4W|1|AA|U|1286
4V4W|1|AA|A|1287
4V4W|1|AA|A|1288
4V4W|1|AA|A|1289
4V4W|1|AA|G|1290
4V4W|1|AA|U|1291
4V4W|1|AA|G|1292
4V4W|1|AA|C|1293
4V4W|1|AA|G|1294
4V4W|1|AA|U|1295
4V4W|1|AA|C|1296
4V4W|1|AA|G|1297
4V4W|1|AA|U|1298
4V4W|1|AA|A|1299
4V4W|1|AA|G|1300
4V4W|1|AA|U|1301
4V4W|1|AA|C|1302
4V4W|1|AA|C|1303
4V4W|1|AA|G|1304
4V4W|1|AA|G|1305
4V4W|1|AA|A|1306
4V4W|1|AA|U|1307
4V4W|1|AA|U|1308
*
4V4W|1|AA|A|1329
4V4W|1|AA|U|1330
4V4W|1|AA|G|1331
4V4W|1|AA|A|1332
4V4W|1|AA|A|1333
4V4W|1|AA|G|1334
4V4W|1|AA|U|1335
4V4W|1|AA|C|1336
4V4W|1|AA|G|1337
4V4W|1|AA|G|1338
4V4W|1|AA|A|1339
4V4W|1|AA|A|1340
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AG
- 30S ribosomal subunit protein S7
- Chain AI
- 30S ribosomal subunit protein S9
- Chain AJ
- 30S ribosomal subunit protein S10
- Chain AM
- 30S ribosomal subunit protein S13
- Chain AV
- Transfer RNA; tRNA
- Chain AW
- Transfer RNA; tRNA
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