Loop J4_4V4W

3D structure

PDB id: 4V4W (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
Experimental method: ELECTRON MICROSCOPY
Resolution: 15 Å

Loop

Sequence: CUUGACAUCCACGGAAGU*AUGUGCC*GGAACCGUGAGACAG*CUUACG
Length: 46 nucleotides
Bulged bases: 4V4W|1|AA|A|1004, 4V4W|1|AA|U|1212, 4V4W|1|AA|C|1214
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V4W|1|AA|C|990
4V4W|1|AA|U|991
4V4W|1|AA|U|992
4V4W|1|AA|G|993
4V4W|1|AA|A|994
4V4W|1|AA|C|995
4V4W|1|AA|A|996
4V4W|1|AA|U|997
4V4W|1|AA|C|998
4V4W|1|AA|C|999
4V4W|1|AA|A|1000
4V4W|1|AA|C|1001
4V4W|1|AA|G|1002
4V4W|1|AA|G|1003
4V4W|1|AA|A|1004
4V4W|1|AA|A|1005
4V4W|1|AA|G|1006
4V4W|1|AA|U|1007
*
4V4W|1|AA|A|1022
4V4W|1|AA|U|1023
4V4W|1|AA|G|1024
4V4W|1|AA|U|1025
4V4W|1|AA|G|1026
4V4W|1|AA|C|1027
4V4W|1|AA|C|1028
*
4V4W|1|AA|G|1033
4V4W|1|AA|G|1034
4V4W|1|AA|A|1035
4V4W|1|AA|A|1036
4V4W|1|AA|C|1037
4V4W|1|AA|C|1038
4V4W|1|AA|G|1039
4V4W|1|AA|U|1040
4V4W|1|AA|G|1041
4V4W|1|AA|A|1042
4V4W|1|AA|G|1043
4V4W|1|AA|A|1044
4V4W|1|AA|C|1045
4V4W|1|AA|A|1046
4V4W|1|AA|G|1047
*
4V4W|1|AA|C|1210
4V4W|1|AA|U|1211
4V4W|1|AA|U|1212
4V4W|1|AA|A|1213
4V4W|1|AA|C|1214
4V4W|1|AA|G|1215

Current chains

Chain AA: 16S ribosomal RNA

Nearby chains

Chain AN: 30S ribosomal subunit protein S14

J4_4V4W_005