J4_4V4W_008
3D structure
- PDB id
- 4V4W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- UUAG*CGC*GAGGUCC*GA
- Length
- 16 nucleotides
- Bulged bases
- 4V4W|1|AW|U|8, 4V4W|1|AW|U|47, 4V4W|1|AW|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V4W_008 not in the Motif Atlas
- Homologous match to J4_7EQJ_002
- Geometric discrepancy: 0.16
- The information below is about J4_7EQJ_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
4V4W|1|AW|U|7
4V4W|1|AW|U|8
4V4W|1|AW|A|9
4V4W|1|AW|G|10
*
4V4W|1|AW|C|25
4V4W|1|AW|G|26
4V4W|1|AW|C|27
*
4V4W|1|AW|G|43
4V4W|1|AW|A|44
4V4W|1|AW|G|45
4V4W|1|AW|G|46
4V4W|1|AW|U|47
4V4W|1|AW|C|48
4V4W|1|AW|C|49
*
4V4W|1|AW|G|65
4V4W|1|AW|A|66
Current chains
- Chain AW
- tRNA
Nearby chains
- Chain B1
- 50S ribosomal protein L33
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