J4_4V4W_009

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CCG*CGAUGAGUAG*UGAAUAUG*CAAG

Length

25 nucleotides

Bulged bases

4V4W|1|B0|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4W|1|B0|C|268
4V4W|1|B0|C|269
4V4W|1|B0|G|271
*
4V4W|1|B0|C|366
4V4W|1|B0|G|367
4V4W|1|B0|A|368
4V4W|1|B0|U|369
4V4W|1|B0|G|370
4V4W|1|B0|A|371
4V4W|1|B0|G|372
4V4W|1|B0|U|373
4V4W|1|B0|A|374
4V4W|1|B0|G|375
*
4V4W|1|B0|U|399
4V4W|1|B0|G|400
4V4W|1|B0|A|401
4V4W|1|B0|A|402
4V4W|1|B0|U|403
4V4W|1|B0|A|404
4V4W|1|B0|U|405
4V4W|1|B0|G|406
*
4V4W|1|B0|C|421
4V4W|1|B0|A|422
4V4W|1|B0|A|423
4V4W|1|B0|G|424

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L9