J4_4V4W_010

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

4V4W|1|B0|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V4W_010 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1468

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V4W|1|B0|G|1310
4V4W|1|B0|G|1311
4V4W|1|B0|U|1312
4V4W|1|B0|U|1313
4V4W|1|B0|C|1314
*
4V4W|1|B0|G|1338
4V4W|1|B0|G|1339
4V4W|1|B0|U|1340
4V4W|1|B0|G|1341
4V4W|1|B0|A|1342
4V4W|1|B0|G|1343
*
4V4W|1|B0|C|1404
4V4W|1|B0|U|1405
*
4V4W|1|B0|A|1597
4V4W|1|B0|A|1598
4V4W|1|B0|U|1599
4V4W|1|B0|C|1600
4V4W|1|B0|G|1601
4V4W|1|B0|U|1602
4V4W|1|B0|A|1603
4V4W|1|B0|C|1604

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BR

50S ribosomal protein L23