J4_4V4W_011

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

AACUG*CACAG*UGACG*CGUAAU

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4W|1|B0|A|1772
4V4W|1|B0|A|1773
4V4W|1|B0|C|1774
4V4W|1|B0|U|1775
4V4W|1|B0|G|1776
*
4V4W|1|B0|C|1788
4V4W|1|B0|A|1789
4V4W|1|B0|C|1790
4V4W|1|B0|A|1791
4V4W|1|B0|G|1792
*
4V4W|1|B0|U|1827
4V4W|1|B0|G|1828
4V4W|1|B0|A|1829
4V4W|1|B0|C|1830
4V4W|1|B0|G|1831
*
4V4W|1|B0|C|1974
4V4W|1|B0|G|1975
4V4W|1|B0|U|1976
4V4W|1|B0|A|1977
4V4W|1|B0|A|1978
4V4W|1|B0|U|1979

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA