J4_4V4W_012

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CUGCCCGGUGCCGG*CCGGUAAACGGCGGC*GUCCUAAGGUAGCGAAAUUCCUUG*CCUGCACGAAUG

Length

65 nucleotides

Bulged bases

4V4W|1|B0|A|1938, 4V4W|1|B0|U|1944, 4V4W|1|B0|U|1963, 4V4W|1|B0|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4W|1|B0|C|1833
4V4W|1|B0|U|1834
4V4W|1|B0|G|1835
4V4W|1|B0|C|1836
4V4W|1|B0|C|1837
4V4W|1|B0|C|1838
4V4W|1|B0|G|1839
4V4W|1|B0|G|1840
4V4W|1|B0|U|1841
4V4W|1|B0|G|1842
4V4W|1|B0|C|1843
4V4W|1|B0|C|1844
4V4W|1|B0|G|1845
4V4W|1|B0|G|1846
*
4V4W|1|B0|C|1894
4V4W|1|B0|C|1895
4V4W|1|B0|G|1896
4V4W|1|B0|G|1897
4V4W|1|B0|U|1898
4V4W|1|B0|A|1899
4V4W|1|B0|A|1900
4V4W|1|B0|A|1901
4V4W|1|B0|C|1902
4V4W|1|B0|G|1903
4V4W|1|B0|G|1904
4V4W|1|B0|C|1905
4V4W|1|B0|G|1906
4V4W|1|B0|G|1907
4V4W|1|B0|C|1908
*
4V4W|1|B0|G|1922
4V4W|1|B0|U|1923
4V4W|1|B0|C|1924
4V4W|1|B0|C|1925
4V4W|1|B0|U|1926
4V4W|1|B0|A|1927
4V4W|1|B0|A|1928
4V4W|1|B0|G|1929
4V4W|1|B0|G|1930
4V4W|1|B0|U|1931
4V4W|1|B0|A|1932
4V4W|1|B0|G|1933
4V4W|1|B0|C|1934
4V4W|1|B0|G|1935
4V4W|1|B0|A|1936
4V4W|1|B0|A|1937
4V4W|1|B0|A|1938
4V4W|1|B0|U|1939
4V4W|1|B0|U|1940
4V4W|1|B0|C|1941
4V4W|1|B0|C|1942
4V4W|1|B0|U|1943
4V4W|1|B0|U|1944
4V4W|1|B0|G|1945
*
4V4W|1|B0|C|1961
4V4W|1|B0|C|1962
4V4W|1|B0|U|1963
4V4W|1|B0|G|1964
4V4W|1|B0|C|1965
4V4W|1|B0|A|1966
4V4W|1|B0|C|1967
4V4W|1|B0|G|1968
4V4W|1|B0|A|1969
4V4W|1|B0|A|1970
4V4W|1|B0|U|1971
4V4W|1|B0|G|1972

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AU

Transfer RNA; tRNA

Chain AV

Transfer RNA; tRNA