J4_4V4W_016

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GGGC*GACGCA*UGCGGAGA*UUGC

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4W|1|B0|G|2643
4V4W|1|B0|G|2644
4V4W|1|B0|G|2645
4V4W|1|B0|C|2646
*
4V4W|1|B0|G|2674
4V4W|1|B0|A|2675
4V4W|1|B0|C|2676
4V4W|1|B0|G|2677
4V4W|1|B0|C|2678
4V4W|1|B0|A|2679
*
4V4W|1|B0|U|2728
4V4W|1|B0|G|2729
4V4W|1|B0|C|2730
4V4W|1|B0|G|2731
4V4W|1|B0|G|2732
4V4W|1|B0|A|2734
4V4W|1|B0|G|2735
4V4W|1|B0|A|2736
*
4V4W|1|B0|U|2768
4V4W|1|B0|U|2769
4V4W|1|B0|G|2770
4V4W|1|B0|C|2771

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BB

50S ribosomal protein L3

Chain BE

50S ribosomal protein L6

Chain BH

50S ribosomal protein L13

Chain BI

50S ribosomal protein L14