J4_4V4X_001

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4V4X|1|AA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V4X_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.1437

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V4X|1|AA|G|115
4V4X|1|AA|A|116
4V4X|1|AA|G|117
4V4X|1|AA|U|118
4V4X|1|AA|A|119
4V4X|1|AA|A|120
4V4X|1|AA|C|121
4V4X|1|AA|G|122
*
4V4X|1|AA|U|239
4V4X|1|AA|C|240
*
4V4X|1|AA|G|286
4V4X|1|AA|U|287
4V4X|1|AA|A|288
4V4X|1|AA|G|289
*
4V4X|1|AA|C|311
4V4X|1|AA|C|312

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AS

30S ribosomal protein S16

Chain AT

30S ribosomal protein S17