J4_4V4Y_015

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V4Y_015 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.218

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4V4Y|1|BA|G|2643
4V4Y|1|BA|G|2644
4V4Y|1|BA|G|2645
4V4Y|1|BA|C|2646
*
4V4Y|1|BA|G|2674
4V4Y|1|BA|A|2675
4V4Y|1|BA|C|2676
*
4V4Y|1|BA|G|2731
4V4Y|1|BA|G|2732
4V4Y|1|BA|A|2733
4V4Y|1|BA|A|2734
4V4Y|1|BA|G|2735
*
4V4Y|1|BA|C|2769
4V4Y|1|BA|G|2770
4V4Y|1|BA|C|2771

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BM

50S ribosomal protein L13

Chain BN

50S ribosomal protein L14