J4_9DFE_010

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

9DFE|1|1A|G|2643
9DFE|1|1A|G|2644
9DFE|1|1A|G|2645
9DFE|1|1A|C|2646
*
9DFE|1|1A|G|2674
9DFE|1|1A|A|2675
9DFE|1|1A|C|2676
*
9DFE|1|1A|G|2731
9DFE|1|1A|G|2732
9DFE|1|1A|A|2733
9DFE|1|1A|A|2734
9DFE|1|1A|G|2735
*
9DFE|1|1A|C|2769
9DFE|1|1A|G|2770
9DFE|1|1A|C|2771

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1N

50S ribosomal protein L13

Chain 1O

50S ribosomal protein L14