J4_4V4Z_001

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4V4Z|1|AA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V4Z_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.1291

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V4Z|1|AA|G|115
4V4Z|1|AA|A|116
4V4Z|1|AA|G|117
4V4Z|1|AA|U|118
4V4Z|1|AA|A|119
4V4Z|1|AA|A|120
4V4Z|1|AA|C|121
4V4Z|1|AA|G|122
*
4V4Z|1|AA|U|239
4V4Z|1|AA|C|240
*
4V4Z|1|AA|G|286
4V4Z|1|AA|U|287
4V4Z|1|AA|A|288
4V4Z|1|AA|G|289
*
4V4Z|1|AA|C|311
4V4Z|1|AA|C|312

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AS

30S ribosomal protein S16

Chain AT

30S ribosomal protein S17