J4_4V51_019

3D structure

PDB id

4V51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGG*CGAAAG*CCCUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

4V51|1|CA|A|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V51_019 not in the Motif Atlas

Homologous match to J4_4LFB_003

Geometric discrepancy: 0.0601

The information below is about J4_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

4V51|1|CA|G|575
4V51|1|CA|G|576
4V51|1|CA|G|577
*
4V51|1|CA|C|764
4V51|1|CA|G|765
4V51|1|CA|A|766
4V51|1|CA|A|767
4V51|1|CA|A|768
4V51|1|CA|G|769
*
4V51|1|CA|C|810
4V51|1|CA|C|811
4V51|1|CA|C|812
4V51|1|CA|U|813
4V51|1|CA|A|814
4V51|1|CA|A|815
4V51|1|CA|A|816
4V51|1|CA|C|817
4V51|1|CA|G|818
4V51|1|CA|A|819
4V51|1|CA|U|820
4V51|1|CA|G|821
*
4V51|1|CA|C|879
4V51|1|CA|C|880

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CH

30S RIBOSOMAL PROTEIN S8

Chain CL

30S RIBOSOMAL PROTEIN S12

Chain CO

30S RIBOSOMAL PROTEIN S15

Chain CQ

30S RIBOSOMAL PROTEIN S17

Chain DA

Large subunit ribosomal RNA; LSU rRNA