J4_4V53_004

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4V53|1|BB|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V53_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1819

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V53|1|BB|C|268
4V53|1|BB|C|269
*
4V53|1|BB|G|370
4V53|1|BB|A|371
4V53|1|BB|G|372
4V53|1|BB|U|373
4V53|1|BB|A|374
4V53|1|BB|G|375
*
4V53|1|BB|U|399
4V53|1|BB|G|400
4V53|1|BB|A|401
4V53|1|BB|A|402
4V53|1|BB|U|403
4V53|1|BB|A|404
4V53|1|BB|U|405
4V53|1|BB|G|406
*
4V53|1|BB|C|421
4V53|1|BB|A|422
4V53|1|BB|A|423
4V53|1|BB|G|424

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BH

50S ribosomal protein L9

Chain BZ

50S ribosomal protein L28