J4_4V53_015

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

4V53|1|CA|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V53_015 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.2319

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4V53|1|CA|G|115
4V53|1|CA|A|116
4V53|1|CA|G|117
4V53|1|CA|U|118
4V53|1|CA|A|119
4V53|1|CA|A|120
4V53|1|CA|U|121
4V53|1|CA|G|122
*
4V53|1|CA|U|239
4V53|1|CA|G|240
*
4V53|1|CA|C|286
4V53|1|CA|U|287
4V53|1|CA|A|288
4V53|1|CA|G|289
*
4V53|1|CA|C|311
4V53|1|CA|C|312

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CP

30S ribosomal protein S16

Chain CQ

30S ribosomal protein S17